rs580688579 SNP Detail

Summary

• ID
  rs580688579
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG GTGGTGACAT CACTAGTGGT
  T
  GTGACTTCAG GAGTGGTGAT GACAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917727720	MGP_WTSI_5_137150083	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580688579					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727720	MGP_WTSI_5_137150083	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178931 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	815 bp upstream
Tssr1678	transcription start site region 1678	401 bp downstream
Tssr1679	transcription start site region 1679	1344 bp downstream
Tssr1680	transcription start site region 1680	1364 bp upstream
Tssr1681	transcription start site region 1681	1387 bp downstream
Tssr1682	transcription start site region 1682	1404 bp downstream
Tssr1683	transcription start site region 1683	1493 bp downstream
Tssr1684	transcription start site region 1684	1509 bp downstream
Tssr1685	transcription start site region 1685	1523 bp upstream
Tssr1686	transcription start site region 1686	1550 bp downstream
Tssr1687	transcription start site region 1687	1601 bp downstream
Tssr1688	transcription start site region 1688	1625 bp downstream
Tssr1689	transcription start site region 1689	1644 bp upstream
Tssr1690	transcription start site region 1690	1811 bp upstream
Tssr1691	transcription start site region 1691	1815 bp downstream
Tssr1692	transcription start site region 1692	1979 bp downstream
Tssr49309	transcription start site region 49309	282 bp downstream
Tssr49310	transcription start site region 49310	55 bp upstream
Tssr49311	transcription start site region 49311	69 bp upstream
Tssr49312	transcription start site region 49312	449 bp upstream
Tssr49313	transcription start site region 49313	697 bp upstream
Tssr49314	transcription start site region 49314	968 bp upstream
Tssr49315	transcription start site region 49315	984 bp upstream
Tssr49316	transcription start site region 49316	1900 bp upstream
Tssr53919	transcription start site region 53919	435 bp upstream
Tssr53920	transcription start site region 53920	400 bp upstream
Tssr53921	transcription start site region 53921	242 bp upstream
Tssr53922	transcription start site region 53922	226 bp upstream
Tssr53923	transcription start site region 53923	184 bp upstream
Tssr53924	transcription start site region 53924	165 bp upstream
Tssr53925	transcription start site region 53925	133 bp upstream
Tssr53926	transcription start site region 53926	99 bp upstream
Tssr53927	transcription start site region 53927	40 bp downstream
Tssr53928	transcription start site region 53928	58 bp downstream
Tssr53929	transcription start site region 53929	95 bp downstream
Tssr53930	transcription start site region 53930	160 bp downstream
Tssr53931	transcription start site region 53931	185 bp downstream
Tssr53932	transcription start site region 53932	201 bp downstream
Tssr53933	transcription start site region 53933	239 bp downstream
Tssr53934	transcription start site region 53934	271 bp downstream
Tssr53935	transcription start site region 53935	322 bp downstream
Tssr53936	transcription start site region 53936	343 bp downstream
Tssr53937	transcription start site region 53937	433 bp downstream
Tssr53938	transcription start site region 53938	469 bp downstream
Tssr53939	transcription start site region 53939	523 bp downstream
Tssr53940	transcription start site region 53940	699 bp downstream
Tssr53941	transcription start site region 53941	739 bp downstream
Tssr53942	transcription start site region 53942	798 bp downstream
Tssr53943	transcription start site region 53943	963 bp downstream
Tssr53944	transcription start site region 53944	1012 bp downstream
Tssr53945	transcription start site region 53945	1022 bp downstream
Tssr53946	transcription start site region 53946	1043 bp downstream
Tssr53947	transcription start site region 53947	1151 bp downstream