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rs580688759 SNP Detail
Summary
  • ID
    rs580688759
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr7:44128459 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ATTTT CAACTCCTCT TTCTCTTCCC
M
TCCTTCTACG ATACACCTAT CCCCC                                      

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss918712684 MGP_WTSI_7_44479035 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580688759 SNP A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss918712684 MGP_WTSI_7_44479035 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128459 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1656 bp downstream
Tssr2225 transcription start site region 2225 1616 bp downstream
Tssr2226 transcription start site region 2226 1090 bp downstream
Tssr2227 transcription start site region 2227 15 bp downstream
Tssr2228 transcription start site region 2228 1043 bp upstream
Tssr2229 transcription start site region 2229 1319 bp upstream
Tssr2230 transcription start site region 2230 1498 bp upstream
Tssr2231 transcription start site region 2231 1631 bp upstream
Tssr2232 transcription start site region 2232 1806 bp upstream
Tssr2233 transcription start site region 2233 1839 bp upstream
Tssr2234 transcription start site region 2234 1998 bp upstream
Tssr66235 transcription start site region 66235 1993 bp downstream
Tssr66236 transcription start site region 66236 1966 bp downstream
Tssr66237 transcription start site region 66237 1945 bp downstream
Tssr66238 transcription start site region 66238 1926 bp downstream
Tssr66239 transcription start site region 66239 1875 bp downstream
Tssr66240 transcription start site region 66240 1794 bp downstream
Tssr66241 transcription start site region 66241 1782 bp downstream
Tssr66242 transcription start site region 66242 1702 bp downstream
Tssr66243 transcription start site region 66243 1688 bp downstream
Tssr66244 transcription start site region 66244 1637 bp downstream
Tssr66245 transcription start site region 66245 1575 bp downstream
Tssr66246 transcription start site region 66246 1547 bp downstream
Tssr66247 transcription start site region 66247 1500 bp downstream
Tssr66248 transcription start site region 66248 1459 bp downstream
Tssr66249 transcription start site region 66249 1436 bp downstream
Tssr66250 transcription start site region 66250 1417 bp downstream
Tssr66251 transcription start site region 66251 1392 bp downstream
Tssr66252 transcription start site region 66252 1361 bp downstream
Tssr66253 transcription start site region 66253 1333 bp downstream
Tssr66254 transcription start site region 66254 1285 bp downstream
Tssr66255 transcription start site region 66255 1258 bp downstream
Tssr66256 transcription start site region 66256 1209 bp downstream
Tssr66257 transcription start site region 66257 1198 bp downstream
Tssr66258 transcription start site region 66258 1155 bp downstream
Tssr66259 transcription start site region 66259 1119 bp downstream
Tssr66260 transcription start site region 66260 1012 bp downstream
Tssr66261 transcription start site region 66261 991 bp downstream
Tssr66262 transcription start site region 66262 984 bp downstream
Tssr66263 transcription start site region 66263 972 bp downstream
Tssr66264 transcription start site region 66264 948 bp downstream
Tssr66265 transcription start site region 66265 905 bp downstream
Tssr66266 transcription start site region 66266 888 bp downstream
Tssr66267 transcription start site region 66267 851 bp downstream
Tssr66268 transcription start site region 66268 835 bp downstream
Tssr66269 transcription start site region 66269 799 bp downstream
Tssr66270 transcription start site region 66270 764 bp downstream
Tssr66271 transcription start site region 66271 732 bp downstream
Tssr66272 transcription start site region 66272 680 bp downstream
Tssr66273 transcription start site region 66273 662 bp downstream
Tssr66274 transcription start site region 66274 657 bp downstream
Tssr66275 transcription start site region 66275 637 bp downstream
Tssr66276 transcription start site region 66276 617 bp downstream
Tssr66277 transcription start site region 66277 597 bp downstream
Tssr66278 transcription start site region 66278 553 bp downstream
Tssr66279 transcription start site region 66279 508 bp downstream
Tssr66280 transcription start site region 66280 486 bp downstream
Tssr66281 transcription start site region 66281 446 bp downstream
Tssr66282 transcription start site region 66282 429 bp downstream
Tssr66283 transcription start site region 66283 415 bp downstream
Tssr66284 transcription start site region 66284 403 bp downstream
Tssr66285 transcription start site region 66285 389 bp downstream
Tssr66286 transcription start site region 66286 350 bp downstream
Tssr66287 transcription start site region 66287 314 bp downstream
Tssr66288 transcription start site region 66288 289 bp downstream
Tssr66289 transcription start site region 66289 207 bp downstream
Tssr66290 transcription start site region 66290 169 bp downstream
Tssr66291 transcription start site region 66291 143 bp downstream
Tssr66292 transcription start site region 66292 111 bp downstream
Tssr66293 transcription start site region 66293 89 bp downstream
Tssr66294 transcription start site region 66294 65 bp downstream
Tssr66295 transcription start site region 66295 197 bp upstream
Tssr66296 transcription start site region 66296 330 bp upstream
Tssr66297 transcription start site region 66297 373 bp upstream
Tssr66298 transcription start site region 66298 398 bp upstream
Tssr66299 transcription start site region 66299 467 bp upstream
Tssr66300 transcription start site region 66300 474 bp upstream
Tssr66301 transcription start site region 66301 498 bp upstream
Tssr66302 transcription start site region 66302 512 bp upstream
Tssr66303 transcription start site region 66303 553 bp upstream
Tssr66304 transcription start site region 66304 561 bp upstream
Tssr66305 transcription start site region 66305 571 bp upstream
Tssr66306 transcription start site region 66306 605 bp upstream
Tssr66307 transcription start site region 66307 662 bp upstream
Tssr66308 transcription start site region 66308 715 bp upstream
Tssr66309 transcription start site region 66309 736 bp upstream
Tssr66310 transcription start site region 66310 774 bp upstream
Tssr66311 transcription start site region 66311 851 bp upstream
Tssr66312 transcription start site region 66312 867 bp upstream
Tssr66313 transcription start site region 66313 888 bp upstream
Tssr66314 transcription start site region 66314 896 bp upstream
Tssr66315 transcription start site region 66315 916 bp upstream
Tssr66316 transcription start site region 66316 975 bp upstream
Tssr66317 transcription start site region 66317 987 bp upstream
Tssr66318 transcription start site region 66318 1032 bp upstream
Tssr66319 transcription start site region 66319 1055 bp upstream
Tssr66320 transcription start site region 66320 1082 bp upstream
Tssr66321 transcription start site region 66321 1100 bp upstream
Tssr66322 transcription start site region 66322 1120 bp upstream
Tssr66323 transcription start site region 66323 1166 bp upstream
Tssr66324 transcription start site region 66324 1195 bp upstream
Tssr66325 transcription start site region 66325 1225 bp upstream
Tssr66326 transcription start site region 66326 1266 bp upstream
Tssr66327 transcription start site region 66327 1280 bp upstream
Tssr66328 transcription start site region 66328 1296 bp upstream
Tssr66329 transcription start site region 66329 1335 bp upstream
Tssr66330 transcription start site region 66330 1354 bp upstream
Tssr66331 transcription start site region 66331 1368 bp upstream
Tssr66332 transcription start site region 66332 1389 bp upstream
Tssr66333 transcription start site region 66333 1437 bp upstream
Tssr66334 transcription start site region 66334 1449 bp upstream
Tssr66335 transcription start site region 66335 1458 bp upstream
Tssr66336 transcription start site region 66336 1467 bp upstream
Tssr66337 transcription start site region 66337 1485 bp upstream
Tssr66338 transcription start site region 66338 1541 bp upstream
Tssr66339 transcription start site region 66339 1592 bp upstream
Tssr66340 transcription start site region 66340 1637 bp upstream
Tssr66341 transcription start site region 66341 1682 bp upstream
Tssr66342 transcription start site region 66342 1744 bp upstream
Tssr66343 transcription start site region 66343 1776 bp upstream
Tssr66344 transcription start site region 66344 1921 bp upstream
Tssr66345 transcription start site region 66345 1954 bp upstream
Tssr72199 transcription start site region 72199 1552 bp upstream
Tssr72200 transcription start site region 72200 594 bp upstream
Tssr72201 transcription start site region 72201 84 bp upstream
Tssr72202 transcription start site region 72202 758 bp downstream
Tssr72203 transcription start site region 72203 1144 bp downstream
Tssr72204 transcription start site region 72204 1740 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory