rs580691561 SNP Detail

Summary

• ID
  rs580691561
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136806430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC AAAACAACAA AAAACCAAAA
  M
  CAAAAAAACA CAAATCAAAA AACCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918428311	MGP_WTSI_6_136829432	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580691561					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918428311	MGP_WTSI_6_136829432	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136806430 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	1009 bp distal
Rr380176	regulatory region 380176	65 bp downstream
Rr640072	regulatory region 640072	1210 bp distal
Rr640073	regulatory region 640073	579 bp distal
Rr640074	regulatory region 640074	290 bp distal
Smco3	single-pass membrane protein with coiled-coil domains 3	499 bp downstream
Tssr2044	transcription start site region 2044	952 bp downstream
Tssr59337	transcription start site region 59337	1672 bp downstream
Tssr59338	transcription start site region 59338	1634 bp downstream
Tssr59339	transcription start site region 59339	1621 bp downstream
Tssr59340	transcription start site region 59340	1593 bp downstream
Tssr59341	transcription start site region 59341	976 bp downstream
Tssr59342	transcription start site region 59342	607 bp downstream
Tssr63836	transcription start site region 63836	1688 bp upstream
Tssr63837	transcription start site region 63837	1671 bp upstream
Tssr63838	transcription start site region 63838	1663 bp upstream
Tssr63839	transcription start site region 63839	1607 bp upstream
Tssr63840	transcription start site region 63840	1370 bp upstream
Tssr63841	transcription start site region 63841	1253 bp upstream
Tssr63842	transcription start site region 63842	1235 bp upstream
Wbp11	WW domain binding protein 11	1216 bp upstream