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rs580702341 SNP Detail
Summary
  • ID
    rs580702341
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:119157038 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GGAGG GAGGGAGGGG GGGAGGGAGG
    R
    TGGAAGGAAG GAAGGAAGGA AGGAA                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
CAST/EiJ
CE/J
CZECHII/EiJ
FVB/NJ
KK/HlJ
LG/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss921114462 MGP_WTSI_11_119266212 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
CAST/EiJ
CE/J
CZECHII/EiJ
FVB/NJ
KK/HlJ
LG/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580702341 SNP A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss921114462 MGP_WTSI_11_119266212 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:119157038 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ccdc40 coiled-coil domain containing 40 974 bp downstream
Cpgi4265 CpG island 4265 1442 bp proximal
Gaa glucosidase, alpha, acid 1751 bp upstream
Rr232403 regulatory region 232403 38 bp distal
Rr239320 regulatory region 239320 1238 bp distal
Rr239321 regulatory region 239321 838 bp distal
Rr246278 regulatory region 246278 1362 bp proximal
Rr403185 regulatory region 403185 1644 bp upstream
Tssr106170 transcription start site region 106170 1745 bp upstream
Tssr106171 transcription start site region 106171 1792 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory