rs580711176 SNP Detail

Summary

• ID
  rs580711176
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73072242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC CTCCCTCCCT CCCTCCCTCC
  C
  TCCCTCCCTC CCTCCCTCCC ATCTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ
ss919390656	MGP_WTSI_8_72318398	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ
rs580711176					SNP	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919390656	MGP_WTSI_8_72318398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73072242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	200 bp proximal
Gm63983	predicted gene, 63983	539 bp upstream
Klf2	Kruppel-like transcription factor 2 (lung)	664 bp upstream
Rr382265	regulatory region 382265	725 bp downstream
Rr400967	regulatory region 400967	428 bp upstream
Rr665299	regulatory region 665299	1706 bp distal
Rr665300	regulatory region 665300	550 bp distal
Rr665301	regulatory region 665301	49 bp distal
Rr665302	regulatory region 665302	145 bp proximal
Tssr2606	transcription start site region 2606	502 bp downstream
Tssr77968	transcription start site region 77968	483 bp upstream
Tssr77969	transcription start site region 77969	495 bp upstream
Tssr77970	transcription start site region 77970	655 bp upstream
Tssr77971	transcription start site region 77971	1135 bp upstream
Tssr77972	transcription start site region 77972	1185 bp upstream
Tssr77973	transcription start site region 77973	1222 bp upstream
Tssr77974	transcription start site region 77974	1278 bp upstream
Tssr77975	transcription start site region 77975	1428 bp upstream
Tssr77976	transcription start site region 77976	1667 bp upstream