rs580712683 SNP Detail

Summary

• ID
  rs580712683
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:59652981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCG TCCCGGGTTC TTTCTTCCCG
  C
  GTTTCGGCAC CAACTCTTAC CCGCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	I/LnJ	MOLF/EiJ	RF/J	SJL/J	ST/bJ	SWR/J
ss924352067	MGP_WTSI_19_59664549	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	I/LnJ	MOLF/EiJ	RF/J	SJL/J	ST/bJ	SWR/J
rs580712683					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924352067	MGP_WTSI_19_59664549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59652981 () rs orientation: forward

Symbol	Name	Function Class
D19Mit76	DNA segment, Chr 19, Massachusetts Institute of Technology 76	477 bp proximal
D19Mit92	DNA segment, Chr 19, Massachusetts Institute of Technology 92	475 bp proximal
Gm19956	predicted gene, 19956	within coordinates