rs580736816 SNP Detail

Summary

• ID
  rs580736816
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149980587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT TGTTTATCAG CTTATTTTTT
  W
  ATAATCACAA AAATCATGTT CCTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915059797	MGP_WTSI_1_150104836	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580736816					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915059797	MGP_WTSI_1_150104836	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149980587 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	187 bp distal
Rr24983	regulatory region 24983	291 bp distal
Tssr9240	transcription start site region 9240	1995 bp downstream
Tssr9241	transcription start site region 9241	1965 bp downstream
Tssr9242	transcription start site region 9242	1949 bp downstream
Tssr9243	transcription start site region 9243	1822 bp downstream
Tssr9244	transcription start site region 9244	1771 bp downstream
Tssr9245	transcription start site region 9245	1735 bp downstream
Tssr9246	transcription start site region 9246	1716 bp downstream
Tssr9247	transcription start site region 9247	1581 bp downstream
Tssr9248	transcription start site region 9248	1148 bp downstream
Tssr9249	transcription start site region 9249	1134 bp downstream
Tssr9250	transcription start site region 9250	933 bp downstream
Tssr9251	transcription start site region 9251	881 bp downstream
Tssr9252	transcription start site region 9252	846 bp downstream
Tssr9253	transcription start site region 9253	821 bp downstream
Tssr9254	transcription start site region 9254	805 bp downstream
Tssr9255	transcription start site region 9255	754 bp downstream
Tssr9256	transcription start site region 9256	549 bp downstream
Tssr9257	transcription start site region 9257	515 bp downstream
Tssr9258	transcription start site region 9258	499 bp downstream
Tssr9259	transcription start site region 9259	442 bp downstream
Tssr9260	transcription start site region 9260	390 bp downstream
Tssr9261	transcription start site region 9261	371 bp downstream
Tssr9262	transcription start site region 9262	350 bp downstream
Tssr9263	transcription start site region 9263	338 bp downstream
Tssr9264	transcription start site region 9264	289 bp downstream
Tssr9265	transcription start site region 9265	262 bp downstream
Tssr9266	transcription start site region 9266	173 bp downstream
Tssr9267	transcription start site region 9267	109 bp upstream
Tssr9268	transcription start site region 9268	165 bp upstream
Tssr9269	transcription start site region 9269	548 bp upstream
Tssr9270	transcription start site region 9270	588 bp upstream
Tssr9271	transcription start site region 9271	612 bp upstream
Tssr9272	transcription start site region 9272	642 bp upstream
Tssr9273	transcription start site region 9273	694 bp upstream
Tssr9274	transcription start site region 9274	712 bp upstream
Tssr9275	transcription start site region 9275	739 bp upstream
Tssr9276	transcription start site region 9276	754 bp upstream
Tssr9277	transcription start site region 9277	804 bp upstream
Tssr9278	transcription start site region 9278	825 bp upstream
Tssr9279	transcription start site region 9279	846 bp upstream
Tssr9280	transcription start site region 9280	863 bp upstream
Tssr9281	transcription start site region 9281	969 bp upstream
Tssr9282	transcription start site region 9282	1004 bp upstream
Tssr9283	transcription start site region 9283	1018 bp upstream
Tssr9284	transcription start site region 9284	1033 bp upstream
Tssr9285	transcription start site region 9285	1043 bp upstream
Tssr9286	transcription start site region 9286	1127 bp upstream
Tssr9287	transcription start site region 9287	1640 bp upstream
Tssr9288	transcription start site region 9288	1756 bp upstream
Tssr9289	transcription start site region 9289	1773 bp upstream
Tssr9290	transcription start site region 9290	1929 bp upstream
Tssr9291	transcription start site region 9291	1975 bp upstream