rs580751809 SNP Detail

Summary

• ID
  rs580751809
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6951180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT CCATCGGTCC CCCCCCCCCC
  M
  CCCACCACCT CTTTTCGGTC GTTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924137243	MGP_WTSI_19_6973812	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580751809					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924137243	MGP_WTSI_19_6973812	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6951180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10537	CpG island 10537	410 bp proximal
Plcb3	phospholipase C, beta 3	within coordinates
Ppp1r14b	protein phosphatase 1, regulatory inhibitor subunit 14B	1236 bp upstream
Rr543521	regulatory region 543521	1842 bp distal
Rr543522	regulatory region 543522	666 bp proximal
Rr543523	regulatory region 543523	1376 bp proximal
Tssr154704	transcription start site region 154704	801 bp upstream
Tssr154705	transcription start site region 154705	1139 bp upstream
Tssr154706	transcription start site region 154706	1236 bp upstream
Tssr154707	transcription start site region 154707	1264 bp upstream
Tssr154708	transcription start site region 154708	1299 bp upstream
Tssr154709	transcription start site region 154709	1310 bp upstream
Tssr154710	transcription start site region 154710	1326 bp upstream
Tssr154711	transcription start site region 154711	1400 bp upstream