rs580755393 SNP Detail

Summary

• ID
  rs580755393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85705644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC GGGAGTACAG CCAGGTGCTT
  R
  TGAGATACAC TGCAAGTGGA GATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss919442197	MGP_WTSI_8_84979015	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs580755393					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919442197	MGP_WTSI_8_84979015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85705644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	within coordinates
Cpgi20739	CpG island 20739	789 bp proximal
Junb	jun B proto-oncogene	267 bp upstream
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	793 bp downstream
Rr401033	regulatory region 401033	56 bp downstream
Rr401034	regulatory region 401034	863 bp upstream
Tssr78492	transcription start site region 78492	1217 bp downstream
Tssr78493	transcription start site region 78493	1108 bp downstream
Tssr78494	transcription start site region 78494	989 bp downstream
Tssr78495	transcription start site region 78495	844 bp downstream
Tssr78496	transcription start site region 78496	410 bp downstream
Tssr78497	transcription start site region 78497	386 bp downstream
Tssr78498	transcription start site region 78498	28 bp downstream
Tssr78499	transcription start site region 78499	1172 bp upstream
Tssr78500	transcription start site region 78500	1188 bp upstream
Tssr78501	transcription start site region 78501	1336 bp upstream
Tssr82216	transcription start site region 82216	1465 bp upstream
Tssr82217	transcription start site region 82217	1127 bp upstream
Tssr82218	transcription start site region 82218	1015 bp upstream
Tssr82219	transcription start site region 82219	990 bp upstream
Tssr82220	transcription start site region 82220	935 bp upstream
Tssr82221	transcription start site region 82221	899 bp upstream
Tssr82222	transcription start site region 82222	872 bp upstream
Tssr82223	transcription start site region 82223	552 bp upstream
Tssr82224	transcription start site region 82224	475 bp upstream
Tssr82225	transcription start site region 82225	291 bp upstream
Tssr82226	transcription start site region 82226	1982 bp downstream