rs580783765 SNP Detail

Summary

• ID
  rs580783765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21669953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GAAGGAAGGA AGGAAGGAAG
  R
  AAGAAAGAAA GAAAGAAAGA AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SJL/J	ST/bJ
ss923468766	MGP_WTSI_17_21449691	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C58/J	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SJL/J	ST/bJ
rs580783765					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923468766	MGP_WTSI_17_21449691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21669953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8654	CpG island 8654	565 bp proximal
Gm49691	predicted gene, 49691	within coordinates
Rr329631	regulatory region 329631	within coordinates
Rr339243	regulatory region 339243	47 bp proximal
Rr405059	regulatory region 405059	41 bp upstream
Rr405060	regulatory region 405060	443 bp upstream
Tssr142875	transcription start site region 142875	670 bp upstream
Tssr142876	transcription start site region 142876	745 bp upstream
Tssr146589	transcription start site region 146589	565 bp downstream
Zfp51	zinc finger protein 51	683 bp upstream