rs580814334 SNP Detail

Summary

• ID
  rs580814334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11487912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG TGGGGGTGGG GGCGTGGGGG
  R
  CGGGGTTTCA GGCCATGGCA CTAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss921156700	MGP_WTSI_12_11437911	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs580814334					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921156700	MGP_WTSI_12_11437911	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11487912 () rs orientation: forward

Symbol	Name	Function Class
4930511A02Rik	RIKEN cDNA 4930511A02 gene	322 bp upstream
Cpgi4418	CpG island 4418	1139 bp distal
Cpgi4419	CpG island 4419	109 bp proximal
Rr462903	regulatory region 462903	1781 bp distal
Rr462904	regulatory region 462904	808 bp distal
Rr462905	regulatory region 462905	within coordinates
Rr462906	regulatory region 462906	303 bp proximal
Rr462907	regulatory region 462907	831 bp proximal
Tssr3791	transcription start site region 3791	1424 bp upstream
Tssr3792	transcription start site region 3792	1371 bp upstream
Tssr3793	transcription start site region 3793	1191 bp upstream
Tssr112802	transcription start site region 112802	280 bp upstream
Tssr115746	transcription start site region 115746	1402 bp upstream
Tssr115747	transcription start site region 115747	1308 bp upstream
Tssr115748	transcription start site region 115748	1293 bp upstream
Vsnl1	visinin-like 1	1333 bp upstream