rs580820958 SNP Detail

Summary

• ID
  rs580820958
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72537270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT TTTTATTTAT TTATTTATTT
  G
  TTTGTTTGTT TGTTTGTTTG TTTGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss924615115	MGP_WTSI_X_73493664	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs580820958					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924615115	MGP_WTSI_X_73493664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72537270 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	within coordinates
Rr6090	regulatory region 6090	270 bp distal
Rr7747	regulatory region 7747	1303 bp proximal
Rr10758	regulatory region 10758	within coordinates
Tssr5633	transcription start site region 5633	387 bp downstream
Tssr5634	transcription start site region 5634	1033 bp downstream
Tssr5635	transcription start site region 5635	1388 bp downstream
Tssr161215	transcription start site region 161215	1660 bp downstream
Tssr161216	transcription start site region 161216	1642 bp downstream
Tssr161217	transcription start site region 161217	1603 bp downstream
Tssr161218	transcription start site region 161218	1590 bp downstream
Tssr161219	transcription start site region 161219	1529 bp downstream
Tssr161220	transcription start site region 161220	926 bp downstream
Tssr161221	transcription start site region 161221	867 bp downstream
Tssr161222	transcription start site region 161222	852 bp downstream
Tssr161223	transcription start site region 161223	682 bp downstream
Tssr161224	transcription start site region 161224	628 bp downstream
Tssr161225	transcription start site region 161225	450 bp downstream
Tssr161226	transcription start site region 161226	399 bp downstream
Tssr161227	transcription start site region 161227	349 bp downstream
Tssr161228	transcription start site region 161228	934 bp upstream
Tssr161229	transcription start site region 161229	967 bp upstream
Tssr161230	transcription start site region 161230	991 bp upstream
Tssr161231	transcription start site region 161231	1008 bp upstream
Tssr161232	transcription start site region 161232	1059 bp upstream
Tssr161233	transcription start site region 161233	1131 bp upstream
Tssr161234	transcription start site region 161234	1151 bp upstream
Tssr161235	transcription start site region 161235	1216 bp upstream
Tssr161236	transcription start site region 161236	1259 bp upstream
Tssr161237	transcription start site region 161237	1313 bp upstream
Tssr161238	transcription start site region 161238	1349 bp upstream
Tssr161239	transcription start site region 161239	1398 bp upstream
Tssr161240	transcription start site region 161240	1412 bp upstream
Tssr161241	transcription start site region 161241	1448 bp upstream
Tssr161242	transcription start site region 161242	1481 bp upstream
Tssr161243	transcription start site region 161243	1645 bp upstream
Tssr161244	transcription start site region 161244	1669 bp upstream
Tssr161245	transcription start site region 161245	1764 bp upstream
Tssr161246	transcription start site region 161246	1920 bp upstream
Tssr161247	transcription start site region 161247	1943 bp upstream
Tssr163545	transcription start site region 163545	1601 bp upstream
Tssr163546	transcription start site region 163546	1537 bp upstream
Tssr163547	transcription start site region 163547	954 bp downstream
Tssr163548	transcription start site region 163548	1060 bp downstream
Tssr163549	transcription start site region 163549	1137 bp downstream
Tssr163550	transcription start site region 163550	1192 bp downstream
Tssr163551	transcription start site region 163551	1277 bp downstream
Tssr163552	transcription start site region 163552	1403 bp downstream
Tssr163553	transcription start site region 163553	1489 bp downstream
Tssr163554	transcription start site region 163554	1508 bp downstream
Tssr163555	transcription start site region 163555	1535 bp downstream