rs580825724 SNP Detail

Summary

• ID
  rs580825724
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73072201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC CTTCCCTCCC TCCCTCCCTC
  C
  CTCCCTCCCT CCCTCCCTCC CTCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss919390653	MGP_WTSI_8_72318357	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs580825724					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919390653	MGP_WTSI_8_72318357	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73072201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	241 bp proximal
Gm63983	predicted gene, 63983	498 bp upstream
Klf2	Kruppel-like transcription factor 2 (lung)	705 bp upstream
Rr382265	regulatory region 382265	684 bp downstream
Rr400967	regulatory region 400967	469 bp upstream
Rr665299	regulatory region 665299	1665 bp distal
Rr665300	regulatory region 665300	509 bp distal
Rr665301	regulatory region 665301	8 bp distal
Rr665302	regulatory region 665302	186 bp proximal
Tssr2606	transcription start site region 2606	543 bp downstream
Tssr77968	transcription start site region 77968	524 bp upstream
Tssr77969	transcription start site region 77969	536 bp upstream
Tssr77970	transcription start site region 77970	696 bp upstream
Tssr77971	transcription start site region 77971	1176 bp upstream
Tssr77972	transcription start site region 77972	1226 bp upstream
Tssr77973	transcription start site region 77973	1263 bp upstream
Tssr77974	transcription start site region 77974	1319 bp upstream
Tssr77975	transcription start site region 77975	1469 bp upstream
Tssr77976	transcription start site region 77976	1708 bp upstream