rs580849144 SNP Detail

Summary

• ID
  rs580849144
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3071469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATC ACATCATGTT CAGCCCTAGC
  C
  CTTGTTAGGG AAACAGCCTC GAACT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CBA/J	DBA/1J	DBA/2J	SM/J
ss920693790	MGP_WTSI_11_3121469	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CBA/J	DBA/1J	DBA/2J	SM/J
rs580849144					SNP	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920693790	MGP_WTSI_11_3121469	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3071469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1795 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr402381	regulatory region 402381	244 bp downstream
Rr441449	regulatory region 441449	680 bp proximal
Rr441450	regulatory region 441450	1450 bp proximal
Rr441451	regulatory region 441451	1857 bp proximal