rs580850614 SNP Detail

Summary

• ID
  rs580850614
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93934746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTT TTTTTTAGTG TTCTTAAGTT
  G
  TTTTTTTTTT TTTTATAATT TTAGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SEA/GnJ	SM/J	ZALENDE/EiJ
ss924718733	MGP_WTSI_X_94891140	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SEA/GnJ	SM/J	ZALENDE/EiJ
rs580850614					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924718733	MGP_WTSI_X_94891140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93934746 () rs orientation: forward

Symbol	Name	Function Class
Rr8004	regulatory region 8004	1182 bp distal
Rr8005	regulatory region 8005	510 bp distal
Rr406123	regulatory region 406123	235 bp upstream
Rr406124	regulatory region 406124	1192 bp upstream
Rr406125	regulatory region 406125	1951 bp upstream