rs580857883 SNP Detail

Summary

• ID
  rs580857883
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7279783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT TGAGAATTGA CAAATGGGAC
  M
  TCATGAAACT GCAAAGTTTC TGCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ
ss918503625	MGP_WTSI_7_7276784	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	A	A	C	C	A	A	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ
rs580857883					SNP	C	C	C	C	C	C	C	A	A	C	C	A	A	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918503625	MGP_WTSI_7_7276784	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7279783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	944 bp proximal
Gm45844	predicted gene 45844	within coordinates
Tssr64464	transcription start site region 64464	1205 bp upstream
Tssr70610	transcription start site region 70610	1245 bp downstream
Tssr70611	transcription start site region 70611	1286 bp downstream