rs580864245 SNP Detail

Summary

• ID
  rs580864245
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55241331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTG AGGTTTTCCT GGGGGGGGGG
  G
  GGACGCCGGG GGGGGGGGGG AGAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss924338316	MGP_WTSI_19_55252899	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs580864245					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924338316	MGP_WTSI_19_55252899	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55241331 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	within coordinates
Cpgi11077	CpG island 11077	1116 bp proximal
Rr363563	regulatory region 363563	130 bp distal
Rr363564	regulatory region 363564	69 bp proximal
Rr370538	regulatory region 370538	985 bp upstream
Rr406037	regulatory region 406037	1736 bp upstream
Tssr5558	transcription start site region 5558	1056 bp downstream
Tssr157068	transcription start site region 157068	996 bp downstream
Tssr157069	transcription start site region 157069	955 bp downstream
Tssr157070	transcription start site region 157070	936 bp downstream
Tssr157071	transcription start site region 157071	742 bp upstream
Tssr157072	transcription start site region 157072	794 bp upstream
Tssr157073	transcription start site region 157073	1001 bp upstream
Tssr157074	transcription start site region 157074	1067 bp upstream
Tssr157075	transcription start site region 157075	1082 bp upstream