rs580865430 SNP Detail

Summary

• ID
  rs580865430
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137878333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA ATGTCAGGGC CAAAAAGTGG
  K
  AATGGGTGGG TAGGGGAGTG GGGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	SPRET/EiJ	WSB/EiJ
ss916466807	MGP_WTSI_3_138172572	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	SPRET/EiJ	WSB/EiJ
rs580865430					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916466807	MGP_WTSI_3_138172572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137878333 () rs orientation: forward

Symbol	Name	Function Class
4930579F01Rik	RIKEN cDNA 4930579F01 gene	Intron
Rr586090	regulatory region 586090	199 bp proximal