rs580876509 SNP Detail

Summary

• ID
  rs580876509
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121304093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC CTCTCCAGCC TCCTTTACTT
  C
  ATATTTCGAG AGAGATCTCC TCACT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	PWK/PhJ
ss915663843	MGP_WTSI_2_121473612	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	PWK/PhJ
rs580876509					SNP	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915663843	MGP_WTSI_2_121473612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121304093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12161	CpG island 12161	341 bp proximal
Gm75774	predicted gene, 75774	477 bp upstream
Mfap1b	microfibrillar-associated protein 1B	within coordinates
Rr563831	regulatory region 563831	527 bp distal
Rr563832	regulatory region 563832	399 bp distal
Rr563833	regulatory region 563833	445 bp proximal
Rr563834	regulatory region 563834	488 bp proximal
Tssr25938	transcription start site region 25938	381 bp downstream
Tssr25939	transcription start site region 25939	429 bp downstream