rs580930200 SNP Detail

Summary

• ID
  rs580930200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG ACATCAGCAG TGGTGGTTAC
  Y
  TCAGCAGAAG TGGTGACATC GGCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss917727677	MGP_WTSI_5_137149243	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs580930200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727677	MGP_WTSI_5_137149243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178091 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	16 bp downstream
Tssr1678	transcription start site region 1678	1241 bp downstream
Tssr49309	transcription start site region 49309	535 bp upstream
Tssr49310	transcription start site region 49310	895 bp upstream
Tssr49311	transcription start site region 49311	909 bp upstream
Tssr49312	transcription start site region 49312	1289 bp upstream
Tssr49313	transcription start site region 49313	1537 bp upstream
Tssr49314	transcription start site region 49314	1808 bp upstream
Tssr49315	transcription start site region 49315	1824 bp upstream
Tssr53919	transcription start site region 53919	395 bp downstream
Tssr53920	transcription start site region 53920	411 bp downstream
Tssr53921	transcription start site region 53921	566 bp downstream
Tssr53922	transcription start site region 53922	607 bp downstream
Tssr53923	transcription start site region 53923	648 bp downstream
Tssr53924	transcription start site region 53924	662 bp downstream
Tssr53925	transcription start site region 53925	700 bp downstream
Tssr53926	transcription start site region 53926	731 bp downstream
Tssr53927	transcription start site region 53927	880 bp downstream
Tssr53928	transcription start site region 53928	898 bp downstream
Tssr53929	transcription start site region 53929	935 bp downstream
Tssr53930	transcription start site region 53930	1000 bp downstream
Tssr53931	transcription start site region 53931	1025 bp downstream
Tssr53932	transcription start site region 53932	1041 bp downstream
Tssr53933	transcription start site region 53933	1079 bp downstream
Tssr53934	transcription start site region 53934	1111 bp downstream
Tssr53935	transcription start site region 53935	1162 bp downstream
Tssr53936	transcription start site region 53936	1183 bp downstream
Tssr53937	transcription start site region 53937	1273 bp downstream
Tssr53938	transcription start site region 53938	1309 bp downstream
Tssr53939	transcription start site region 53939	1363 bp downstream
Tssr53940	transcription start site region 53940	1539 bp downstream
Tssr53941	transcription start site region 53941	1579 bp downstream
Tssr53942	transcription start site region 53942	1638 bp downstream
Tssr53943	transcription start site region 53943	1803 bp downstream
Tssr53944	transcription start site region 53944	1852 bp downstream
Tssr53945	transcription start site region 53945	1862 bp downstream
Tssr53946	transcription start site region 53946	1883 bp downstream
Tssr53947	transcription start site region 53947	1991 bp downstream