rs580935187 SNP Detail

Summary

• ID
  rs580935187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84328007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACATACA CACACACATA
  Y
  ACACACACAC ACACACATGC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	SM/J
ss919438662	MGP_WTSI_8_83601378	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	SM/J
rs580935187					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919438662	MGP_WTSI_8_83601378	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84328007 () rs orientation: forward

Symbol	Name	Function Class
Gm18001	predicted gene, 18001	678 bp downstream
Gm42029	predicted gene, 42029	within coordinates
Rr178049	regulatory region 178049	594 bp proximal