rs580939884 SNP Detail

Summary

• ID
  rs580939884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57529763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG AGAGAGAGAG AGAGAGAGAG
  R
  GAGAGAGAGA GAGAGAGAGA CTCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss923635043	MGP_WTSI_17_57222763	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs580939884					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923635043	MGP_WTSI_17_57222763	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57529763 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	1559 bp proximal
Gm65552	predicted gene, 65552	1253 bp downstream
Tssr145377	transcription start site region 145377	532 bp downstream
Tssr145378	transcription start site region 145378	349 bp upstream
Tssr145379	transcription start site region 145379	430 bp upstream
Tssr145380	transcription start site region 145380	459 bp upstream
Tssr145381	transcription start site region 145381	525 bp upstream
Tssr145382	transcription start site region 145382	1055 bp upstream
Tssr145383	transcription start site region 145383	1171 bp upstream
Tssr145384	transcription start site region 145384	1304 bp upstream
Tssr148935	transcription start site region 148935	1711 bp upstream
Tssr148936	transcription start site region 148936	1690 bp upstream
Tssr148937	transcription start site region 148937	1669 bp upstream
Tssr148938	transcription start site region 148938	1363 bp upstream
Tssr148939	transcription start site region 148939	834 bp upstream
Tssr148940	transcription start site region 148940	490 bp upstream
Tssr148941	transcription start site region 148941	417 bp upstream
Tssr148942	transcription start site region 148942	68 bp downstream
Tssr148943	transcription start site region 148943	108 bp downstream
Tssr148944	transcription start site region 148944	128 bp downstream
Tssr148945	transcription start site region 148945	156 bp downstream
Tssr148946	transcription start site region 148946	181 bp downstream
Tssr148947	transcription start site region 148947	420 bp downstream
Tssr148948	transcription start site region 148948	472 bp downstream
Tssr148949	transcription start site region 148949	527 bp downstream
Tssr148950	transcription start site region 148950	1092 bp downstream
Tssr148951	transcription start site region 148951	1133 bp downstream
Tssr148952	transcription start site region 148952	1174 bp downstream
Tssr148953	transcription start site region 148953	1358 bp downstream
Tssr148954	transcription start site region 148954	1409 bp downstream
Tssr148955	transcription start site region 148955	1556 bp downstream
Tssr148956	transcription start site region 148956	1589 bp downstream