rs580945779 SNP Detail

Summary

• ID
  rs580945779
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15734933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG AGGGGGCTTT CCTCACTGCA
  G
  CAAACTCACC AAGCAGTATT GCTTA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeH	C57BL/6J	C57L/J	C58/J	LG/J
ss917237359	MGP_WTSI_5_15529935	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeH	C57BL/6J	C57L/J	C58/J	LG/J
rs580945779					SNP	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917237359	MGP_WTSI_5_15529935	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15734933 () rs orientation: forward

Symbol	Name	Function Class
Gm21190	predicted gene, 21190	713 bp upstream
Rr607456	regulatory region 607456	223 bp distal
Rr607457	regulatory region 607457	974 bp proximal