rs580971472 SNP Detail

Summary

• ID
  rs580971472
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AAGGAAGGAA GGAAGGAAGG
  G
  AGGGAGGGAG GGAGGGAGAA AGGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss923116066	MGP_WTSI_16_32486793	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs580971472					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923116066	MGP_WTSI_16_32486793	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305611 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1266 bp upstream
Rr514710	regulatory region 514710	1240 bp distal
Rr514711	regulatory region 514711	339 bp proximal
Rr514712	regulatory region 514712	1076 bp proximal
Rr514713	regulatory region 514713	1277 bp proximal
Rr514714	regulatory region 514714	1978 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	803 bp downstream
Tssr4847	transcription start site region 4847	822 bp downstream
Tssr137989	transcription start site region 137989	1300 bp upstream
Tssr140806	transcription start site region 140806	618 bp upstream
Tssr140807	transcription start site region 140807	359 bp downstream
Tssr140808	transcription start site region 140808	375 bp downstream
Tssr140809	transcription start site region 140809	402 bp downstream
Tssr140810	transcription start site region 140810	432 bp downstream
Tssr140811	transcription start site region 140811	850 bp downstream
Tssr140812	transcription start site region 140812	874 bp downstream
Tssr140813	transcription start site region 140813	1016 bp downstream
Tssr140814	transcription start site region 140814	1080 bp downstream
Tssr140815	transcription start site region 140815	1104 bp downstream