rs580975060 SNP Detail

Summary

• ID
  rs580975060
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3028308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATT TCTAAATTTT CTACATTTTT
  A
  AATTTTCCTC GCCATATTTC ACGTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CE/J	MA/MyJ	SJL/J
ss919606960	MGP_WTSI_9_3028308	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CE/J	MA/MyJ	SJL/J
rs580975060					SNP	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919606960	MGP_WTSI_9_3028308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3028308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21324	CpG island 21324	1128 bp distal
Cpgi21325	CpG island 21325	1079 bp proximal
Rr673606	regulatory region 673606	1778 bp distal
Rr673607	regulatory region 673607	1298 bp distal
Rr673608	regulatory region 673608	648 bp distal
Rr673609	regulatory region 673609	within coordinates
Rr673610	regulatory region 673610	573 bp proximal
Tssr83582	transcription start site region 83582	1813 bp downstream
Tssr83583	transcription start site region 83583	1626 bp downstream
Tssr83584	transcription start site region 83584	1539 bp downstream
Tssr83585	transcription start site region 83585	1163 bp downstream
Tssr83586	transcription start site region 83586	840 bp downstream
Tssr83587	transcription start site region 83587	533 bp downstream
Tssr83588	transcription start site region 83588	1063 bp upstream
Tssr83589	transcription start site region 83589	1347 bp upstream
Tssr83590	transcription start site region 83590	1847 bp upstream
Tssr88019	transcription start site region 88019	1588 bp upstream
Tssr88020	transcription start site region 88020	1520 bp upstream
Tssr88021	transcription start site region 88021	896 bp upstream
Tssr88022	transcription start site region 88022	820 bp upstream
Tssr88023	transcription start site region 88023	1094 bp downstream