rs580992645 SNP Detail

Summary

• ID
  rs580992645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93592751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC TAAAAGTTTA TTGCGTATAT
  R
  TATATATATA TATATATGTA TATAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss924717250	MGP_WTSI_X_94549145	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs580992645					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924717250	MGP_WTSI_X_94549145	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93592751 () rs orientation: forward

Symbol	Name	Function Class
Gm9005	predicted gene 9005	1576 bp upstream
Rr4987	regulatory region 4987	551 bp distal
Rr10841	regulatory region 10841	508 bp distal