rs580996939 SNP Detail

Summary

• ID
  rs580996939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:4228591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT GGATGGATGG ATGGATGGAT
  Y
  GATAGATAGA TAGATAGATA GATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss922186888	MGP_WTSI_14_18241105	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs580996939					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922186888	MGP_WTSI_14_18241105	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:4228591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6187	CpG island 6187	1532 bp proximal
Cpgi6188	CpG island 6188	1683 bp distal
Gm7084	predicted gene 7084	1317 bp upstream
Gm62505	predicted gene, 62505	within coordinates
Nr1d2	nuclear receptor subfamily 1, group D, member 2	1978 bp upstream
Rr487195	regulatory region 487195	1488 bp proximal
Rr487196	regulatory region 487196	1865 bp proximal
Rr487197	regulatory region 487197	1989 bp proximal