rs581006673 SNP Detail

Summary

• ID
  rs581006673
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81358596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA GTGGACTCTG CTACTCTTCT
  C
  CTCTCCTTCA ACCCAAGGCT TCCCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss918876253	MGP_WTSI_7_81708848	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs581006673					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918876253	MGP_WTSI_7_81708848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81358596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19358	CpG island 19358	1080 bp distal
Gm32579	predicted gene, 32579	within coordinates
Homer2	homer scaffolding protein 2	1923 bp upstream
Rr650186	regulatory region 650186	1414 bp distal
Tssr73349	transcription start site region 73349	1979 bp upstream
Tssr73350	transcription start site region 73350	1947 bp upstream
Tssr73351	transcription start site region 73351	1884 bp upstream
Tssr73352	transcription start site region 73352	1750 bp upstream