rs581085794 SNP Detail

Summary

• ID
  rs581085794
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC GGACGCGGAC CTGAACCCCC
  G
  TCTGCCCGGG GACGCCGCCG CCACG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	NON/ShiLtJ	NZO/HlLtJ
ss918503642	MGP_WTSI_7_7278127	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	NON/ShiLtJ	NZO/HlLtJ
rs581085794					SNP	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918503642	MGP_WTSI_7_7278127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	within coordinates
Tssr64464	transcription start site region 64464	127 bp downstream
Tssr70610	transcription start site region 70610	82 bp upstream
Tssr70611	transcription start site region 70611	41 bp upstream