rs581099141 SNP Detail

Summary

• ID
  rs581099141
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84492032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT AAGAAAACCT CAAAATGTTC
  C
  TCAAACCACT TCCACAGCAT CAAGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss923740109	MGP_WTSI_17_84184604	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs581099141					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923740109	MGP_WTSI_17_84184604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84492032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	994 bp proximal
Gm41640	predicted gene, 41640	1673 bp upstream
Gm64687	predicted gene, 64687	1633 bp downstream
Rr1582	regulatory region 1582	804 bp downstream
Rr532023	regulatory region 532023	1216 bp distal
Rr532024	regulatory region 532024	1594 bp distal
Rr532025	regulatory region 532025	449 bp distal
Rr532026	regulatory region 532026	661 bp proximal
Tssr146043	transcription start site region 146043	832 bp downstream
Tssr146044	transcription start site region 146044	1142 bp upstream
Tssr149649	transcription start site region 149649	1012 bp upstream
Tssr149650	transcription start site region 149650	960 bp downstream
Tssr149651	transcription start site region 149651	998 bp downstream
Tssr149652	transcription start site region 149652	1383 bp downstream
Tssr149653	transcription start site region 149653	1431 bp downstream
Tssr149654	transcription start site region 149654	1571 bp downstream
Tssr149655	transcription start site region 149655	1667 bp downstream
Tssr149656	transcription start site region 149656	1757 bp downstream
Tssr149657	transcription start site region 149657	1973 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates