rs581111841 SNP Detail

Summary

• ID
  rs581111841
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA AGCAGTGGTT GTGACTTCAG
  A
  AGTGGTGGAA ACATCACTAG TGGTT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	ST/bJ
ss917727694	MGP_WTSI_5_137149662	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	ST/bJ
rs581111841					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727694	MGP_WTSI_5_137149662	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178510 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	394 bp upstream
Tssr1678	transcription start site region 1678	822 bp downstream
Tssr1679	transcription start site region 1679	1765 bp downstream
Tssr1680	transcription start site region 1680	1785 bp upstream
Tssr1681	transcription start site region 1681	1808 bp downstream
Tssr1682	transcription start site region 1682	1825 bp downstream
Tssr1683	transcription start site region 1683	1914 bp downstream
Tssr1684	transcription start site region 1684	1930 bp downstream
Tssr1685	transcription start site region 1685	1944 bp upstream
Tssr1686	transcription start site region 1686	1971 bp downstream
Tssr49309	transcription start site region 49309	116 bp upstream
Tssr49310	transcription start site region 49310	476 bp upstream
Tssr49311	transcription start site region 49311	490 bp upstream
Tssr49312	transcription start site region 49312	870 bp upstream
Tssr49313	transcription start site region 49313	1118 bp upstream
Tssr49314	transcription start site region 49314	1389 bp upstream
Tssr49315	transcription start site region 49315	1405 bp upstream
Tssr53919	transcription start site region 53919	14 bp upstream
Tssr53920	transcription start site region 53920	within coordinates
Tssr53921	transcription start site region 53921	147 bp downstream
Tssr53922	transcription start site region 53922	188 bp downstream
Tssr53923	transcription start site region 53923	229 bp downstream
Tssr53924	transcription start site region 53924	243 bp downstream
Tssr53925	transcription start site region 53925	281 bp downstream
Tssr53926	transcription start site region 53926	312 bp downstream
Tssr53927	transcription start site region 53927	461 bp downstream
Tssr53928	transcription start site region 53928	479 bp downstream
Tssr53929	transcription start site region 53929	516 bp downstream
Tssr53930	transcription start site region 53930	581 bp downstream
Tssr53931	transcription start site region 53931	606 bp downstream
Tssr53932	transcription start site region 53932	622 bp downstream
Tssr53933	transcription start site region 53933	660 bp downstream
Tssr53934	transcription start site region 53934	692 bp downstream
Tssr53935	transcription start site region 53935	743 bp downstream
Tssr53936	transcription start site region 53936	764 bp downstream
Tssr53937	transcription start site region 53937	854 bp downstream
Tssr53938	transcription start site region 53938	890 bp downstream
Tssr53939	transcription start site region 53939	944 bp downstream
Tssr53940	transcription start site region 53940	1120 bp downstream
Tssr53941	transcription start site region 53941	1160 bp downstream
Tssr53942	transcription start site region 53942	1219 bp downstream
Tssr53943	transcription start site region 53943	1384 bp downstream
Tssr53944	transcription start site region 53944	1433 bp downstream
Tssr53945	transcription start site region 53945	1443 bp downstream
Tssr53946	transcription start site region 53946	1464 bp downstream
Tssr53947	transcription start site region 53947	1572 bp downstream