rs581112268 SNP Detail

Summary

• ID
  rs581112268
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78141064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT GAGGATGGGG GTGAGGATGG
  A
  GGTGAGGATG GAGATGAGGA TGGGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	RIIIS/J	ST/bJ
ss922915388	MGP_WTSI_15_78256864	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	RIIIS/J	ST/bJ
rs581112268					SNP	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922915388	MGP_WTSI_15_78256864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78141064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7285	CpG island 7285	1846 bp distal
Ncf4	neutrophil cytosolic factor 4	Intron
Rr505234	regulatory region 505234	1879 bp distal
Rr505235	regulatory region 505235	within coordinates
Rr505236	regulatory region 505236	757 bp proximal
Tssr131906	transcription start site region 131906	1970 bp downstream