rs581113397 SNP Detail

Summary

• ID
  rs581113397
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:41771495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA GAGATCCTCC CTCCCTCCCT
  C
  CCTCCCTCCC TCCCTCCCTC CCTCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
ss920341763	MGP_WTSI_10_41895499	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
rs581113397					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920341763	MGP_WTSI_10_41895499	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41771495 () rs orientation: forward

Symbol	Name	Function Class
Rr214767	regulatory region 214767	1295 bp distal
Rr219413	regulatory region 219413	706 bp proximal
Sesn1	sestrin 1	within coordinates
Tssr93071	transcription start site region 93071	1540 bp downstream
Tssr93072	transcription start site region 93072	1521 bp downstream