rs581123035 SNP Detail

Summary

• ID
  rs581123035
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:107698979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG AGGGGGGAGA GGGGGAGAGG
  R
  GGAGAGGGGG GAGAGGGAGA GAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	PL/J	RIIIS/J	SPRET/EiJ	ST/bJ
ss922076738	MGP_WTSI_13_107562479	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	A	G	G	G	G	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	PL/J	RIIIS/J	SPRET/EiJ	ST/bJ
rs581123035					SNP	G	G	A	G	A	G	G	G	G	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922076738	MGP_WTSI_13_107562479	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:107698979 () rs orientation: forward

Symbol	Name	Function Class
Gm31920	predicted gene, 31920	within coordinates
Gm32004	predicted gene, 32004	within coordinates
Rr278138	regulatory region 278138	704 bp distal