rs581124862 SNP Detail

Summary

• ID
  rs581124862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74026231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTCTCTC TCTCTCCCTC
  Y
  CTCTCTCTCT CTCTCTCTCT CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	DBA/1J	FVB/NJ	LP/J	QSi5/Ianm	RIIIS/J	SJL/J
ss914737362	MGP_WTSI_1_73987072	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	DBA/1J	FVB/NJ	LP/J	QSi5/Ianm	RIIIS/J	SJL/J
rs581124862					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914737362	MGP_WTSI_1_73987072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74026231 () rs orientation: forward

Symbol	Name	Function Class
Rr17341	regulatory region 17341	31 bp distal
Rr27623	regulatory region 27623	55 bp distal
Rr34548	regulatory region 34548	138 bp proximal
Tns1	tensin 1	within coordinates
Tssr12229	transcription start site region 12229	270 bp upstream