rs581142141 SNP Detail

Summary

• ID
  rs581142141
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG GCAAGAAAAC TGAAAATCAC
  T
  GAAAATGATA ATAACACTCG TTAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss922192281	MGP_WTSI_14_19419499	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs581142141					SNP	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922192281	MGP_WTSI_14_19419499	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050206 () rs orientation: forward

Symbol	Name	Function Class
Tssr4286	transcription start site region 4286	1991 bp downstream
Tssr4287	transcription start site region 4287	1956 bp upstream
Tssr4288	transcription start site region 4288	1928 bp downstream
Tssr4289	transcription start site region 4289	1833 bp upstream
Tssr4290	transcription start site region 4290	1826 bp downstream
Tssr4291	transcription start site region 4291	1746 bp upstream
Tssr4292	transcription start site region 4292	1710 bp downstream
Tssr4293	transcription start site region 4293	1675 bp upstream
Tssr4294	transcription start site region 4294	1673 bp downstream
Tssr4295	transcription start site region 4295	1600 bp upstream
Tssr4296	transcription start site region 4296	1637 bp downstream
Tssr4297	transcription start site region 4297	1573 bp upstream
Tssr4298	transcription start site region 4298	1555 bp downstream
Tssr4299	transcription start site region 4299	1515 bp downstream
Tssr4300	transcription start site region 4300	1477 bp downstream
Tssr4301	transcription start site region 4301	1459 bp upstream
Tssr4302	transcription start site region 4302	1447 bp upstream
Tssr4303	transcription start site region 4303	1392 bp downstream
Tssr4304	transcription start site region 4304	1363 bp upstream
Tssr4305	transcription start site region 4305	1294 bp downstream
Tssr4306	transcription start site region 4306	1275 bp upstream
Tssr4307	transcription start site region 4307	1254 bp downstream
Tssr4308	transcription start site region 4308	1222 bp upstream
Tssr4309	transcription start site region 4309	1178 bp upstream
Tssr4310	transcription start site region 4310	1131 bp downstream
Tssr4311	transcription start site region 4311	1103 bp upstream
Tssr4312	transcription start site region 4312	1023 bp downstream
Tssr4313	transcription start site region 4313	964 bp upstream
Tssr4314	transcription start site region 4314	952 bp downstream
Tssr4315	transcription start site region 4315	928 bp downstream
Tssr4316	transcription start site region 4316	901 bp upstream
Tssr4317	transcription start site region 4317	825 bp downstream
Tssr4318	transcription start site region 4318	801 bp upstream
Tssr4319	transcription start site region 4319	744 bp upstream
Tssr4320	transcription start site region 4320	680 bp downstream
Tssr4321	transcription start site region 4321	652 bp upstream
Tssr4322	transcription start site region 4322	553 bp downstream
Tssr4323	transcription start site region 4323	518 bp upstream
Tssr4324	transcription start site region 4324	488 bp downstream
Tssr4325	transcription start site region 4325	437 bp downstream
Tssr4326	transcription start site region 4326	399 bp upstream
Tssr4327	transcription start site region 4327	396 bp downstream
Tssr4328	transcription start site region 4328	314 bp downstream
Tssr4329	transcription start site region 4329	316 bp upstream
Tssr4330	transcription start site region 4330	182 bp downstream
Tssr4331	transcription start site region 4331	150 bp upstream
Tssr4332	transcription start site region 4332	64 bp upstream
Tssr4333	transcription start site region 4333	45 bp downstream
Tssr4334	transcription start site region 4334	5 bp upstream
Tssr4335	transcription start site region 4335	98 bp downstream
Tssr4336	transcription start site region 4336	102 bp upstream
Tssr4337	transcription start site region 4337	175 bp downstream