rs581191464 SNP Detail

Summary

• ID
  rs581191464
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34850584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAG ACAACAGGCA CTGCTGCTCT
  S
  GTGCTACCTG TAAAGTGGTT TGTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915346861	MGP_WTSI_2_34960572	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581191464					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915346861	MGP_WTSI_2_34960572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34850584 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			787 bp proximal
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			1937 bp downstream
Rr555567	regulatory region 555567			1501 bp distal
Rr555568	regulatory region 555568			within coordinates
Rr555569	regulatory region 555569			953 bp proximal
Rr555570	regulatory region 555570			1003 bp proximal
Rr555571	regulatory region 555571			1774 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr17439	transcription start site region 17439			1703 bp downstream
Tssr17440	transcription start site region 17440			430 bp upstream
Tssr17441	transcription start site region 17441			829 bp upstream
Tssr17442	transcription start site region 17442			1111 bp upstream
Tssr17443	transcription start site region 17443			1130 bp upstream
Tssr17444	transcription start site region 17444			1147 bp upstream
Tssr17445	transcription start site region 17445			1312 bp upstream
Tssr23671	transcription start site region 23671			1940 bp upstream
Tssr23672	transcription start site region 23672			1829 bp upstream
Tssr23673	transcription start site region 23673			983 bp downstream
Tssr23674	transcription start site region 23674			1179 bp downstream
Tssr23675	transcription start site region 23675			1217 bp downstream
Tssr23676	transcription start site region 23676			1230 bp downstream
Tssr23677	transcription start site region 23677			1248 bp downstream
Tssr23678	transcription start site region 23678			1381 bp downstream