rs581194968 SNP Detail

Summary

• ID
  rs581194968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22712792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGG ACTATGGCTG GGACAGCTGT
  Y
  CGAGCACCGC CCCCCCTCCC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923082498	MGP_WTSI_16_22894042	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581194968					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923082498	MGP_WTSI_16_22894042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22712792 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Tssr4818	transcription start site region 4818	1218 bp downstream
Tssr4819	transcription start site region 4819	1289 bp upstream
Tssr4820	transcription start site region 4820	1905 bp upstream
Tssr137557	transcription start site region 137557	1991 bp downstream
Tssr137558	transcription start site region 137558	1461 bp downstream
Tssr137559	transcription start site region 137559	1265 bp downstream
Tssr137560	transcription start site region 137560	1222 bp downstream
Tssr137561	transcription start site region 137561	1197 bp downstream
Tssr137562	transcription start site region 137562	871 bp downstream
Tssr137563	transcription start site region 137563	187 bp upstream
Tssr137564	transcription start site region 137564	206 bp upstream
Tssr137565	transcription start site region 137565	271 bp upstream
Tssr137566	transcription start site region 137566	370 bp upstream
Tssr137567	transcription start site region 137567	735 bp upstream
Tssr137568	transcription start site region 137568	754 bp upstream
Tssr137569	transcription start site region 137569	785 bp upstream
Tssr137570	transcription start site region 137570	800 bp upstream
Tssr137571	transcription start site region 137571	1134 bp upstream
Tssr137572	transcription start site region 137572	1157 bp upstream
Tssr137573	transcription start site region 137573	1251 bp upstream
Tssr137574	transcription start site region 137574	1272 bp upstream
Tssr137575	transcription start site region 137575	1278 bp upstream
Tssr137576	transcription start site region 137576	1958 bp upstream
Tssr140501	transcription start site region 140501	1893 bp upstream
Tssr140502	transcription start site region 140502	1747 bp upstream
Tssr140503	transcription start site region 140503	1709 bp upstream
Tssr140504	transcription start site region 140504	308 bp downstream
Tssr140505	transcription start site region 140505	381 bp downstream
Tssr140506	transcription start site region 140506	788 bp downstream
Tssr140507	transcription start site region 140507	1171 bp downstream
Tssr140508	transcription start site region 140508	1215 bp downstream
Tssr140509	transcription start site region 140509	1234 bp downstream
Tssr140510	transcription start site region 140510	1249 bp downstream
Tssr140511	transcription start site region 140511	1292 bp downstream