rs581208627 SNP Detail

Summary

• ID
  rs581208627
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172198506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTCTCTC TCTCTCTCTC
  C
  CTCCCTCCCT CCCTCCCTCC CTCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	I/LnJ
ss915129054	MGP_WTSI_1_172370939	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	I/LnJ
rs581208627					SNP	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915129054	MGP_WTSI_1_172370939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172198506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	1483 bp distal
Cpgi1046	CpG island 1046	970 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	1950 bp distal
Tssr10190	transcription start site region 10190	454 bp downstream
Tssr10191	transcription start site region 10191	238 bp downstream
Tssr10192	transcription start site region 10192	58 bp downstream