rs581216453 SNP Detail

Summary

• ID
  rs581216453
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG ACATCAGCAG TGGTGGTGAC
  A
  TCAGCAGTGG TGATTACTTC AGCAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917727717	MGP_WTSI_5_137150035	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581216453					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727717	MGP_WTSI_5_137150035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178883 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	767 bp upstream
Tssr1678	transcription start site region 1678	449 bp downstream
Tssr1679	transcription start site region 1679	1392 bp downstream
Tssr1680	transcription start site region 1680	1412 bp upstream
Tssr1681	transcription start site region 1681	1435 bp downstream
Tssr1682	transcription start site region 1682	1452 bp downstream
Tssr1683	transcription start site region 1683	1541 bp downstream
Tssr1684	transcription start site region 1684	1557 bp downstream
Tssr1685	transcription start site region 1685	1571 bp upstream
Tssr1686	transcription start site region 1686	1598 bp downstream
Tssr1687	transcription start site region 1687	1649 bp downstream
Tssr1688	transcription start site region 1688	1673 bp downstream
Tssr1689	transcription start site region 1689	1692 bp upstream
Tssr1690	transcription start site region 1690	1859 bp upstream
Tssr1691	transcription start site region 1691	1863 bp downstream
Tssr49309	transcription start site region 49309	234 bp downstream
Tssr49310	transcription start site region 49310	103 bp upstream
Tssr49311	transcription start site region 49311	117 bp upstream
Tssr49312	transcription start site region 49312	497 bp upstream
Tssr49313	transcription start site region 49313	745 bp upstream
Tssr49314	transcription start site region 49314	1016 bp upstream
Tssr49315	transcription start site region 49315	1032 bp upstream
Tssr49316	transcription start site region 49316	1948 bp upstream
Tssr53919	transcription start site region 53919	387 bp upstream
Tssr53920	transcription start site region 53920	352 bp upstream
Tssr53921	transcription start site region 53921	194 bp upstream
Tssr53922	transcription start site region 53922	178 bp upstream
Tssr53923	transcription start site region 53923	136 bp upstream
Tssr53924	transcription start site region 53924	117 bp upstream
Tssr53925	transcription start site region 53925	85 bp upstream
Tssr53926	transcription start site region 53926	51 bp upstream
Tssr53927	transcription start site region 53927	88 bp downstream
Tssr53928	transcription start site region 53928	106 bp downstream
Tssr53929	transcription start site region 53929	143 bp downstream
Tssr53930	transcription start site region 53930	208 bp downstream
Tssr53931	transcription start site region 53931	233 bp downstream
Tssr53932	transcription start site region 53932	249 bp downstream
Tssr53933	transcription start site region 53933	287 bp downstream
Tssr53934	transcription start site region 53934	319 bp downstream
Tssr53935	transcription start site region 53935	370 bp downstream
Tssr53936	transcription start site region 53936	391 bp downstream
Tssr53937	transcription start site region 53937	481 bp downstream
Tssr53938	transcription start site region 53938	517 bp downstream
Tssr53939	transcription start site region 53939	571 bp downstream
Tssr53940	transcription start site region 53940	747 bp downstream
Tssr53941	transcription start site region 53941	787 bp downstream
Tssr53942	transcription start site region 53942	846 bp downstream
Tssr53943	transcription start site region 53943	1011 bp downstream
Tssr53944	transcription start site region 53944	1060 bp downstream
Tssr53945	transcription start site region 53945	1070 bp downstream
Tssr53946	transcription start site region 53946	1091 bp downstream
Tssr53947	transcription start site region 53947	1199 bp downstream