rs581235124 SNP Detail

Summary

• ID
  rs581235124
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87685143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT GTTTTGTTTT GTTTTGTTTT
  G
  TTTTGTTTTG TTTTGTTTTT TTAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	RIIIS/J	ST/bJ
ss921001793	MGP_WTSI_11_87794317	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	RIIIS/J	ST/bJ
rs581235124					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921001793	MGP_WTSI_11_87794317	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87685143 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	1247 bp downstream
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	within coordinates
Rr453904	regulatory region 453904	1834 bp proximal
Rr453905	regulatory region 453905	1888 bp proximal
Tssr3631	transcription start site region 3631	433 bp upstream
Tssr3632	transcription start site region 3632	945 bp upstream
Tssr3633	transcription start site region 3633	1996 bp upstream
Tssr103978	transcription start site region 103978	902 bp downstream
Tssr103979	transcription start site region 103979	872 bp downstream
Tssr103980	transcription start site region 103980	834 bp downstream
Tssr103981	transcription start site region 103981	512 bp downstream
Tssr103982	transcription start site region 103982	489 bp downstream
Tssr103983	transcription start site region 103983	470 bp downstream
Tssr103984	transcription start site region 103984	285 bp downstream
Tssr103985	transcription start site region 103985	260 bp downstream
Tssr103986	transcription start site region 103986	246 bp downstream
Tssr103987	transcription start site region 103987	105 bp downstream
Tssr103988	transcription start site region 103988	204 bp upstream
Tssr103989	transcription start site region 103989	462 bp upstream
Tssr103990	transcription start site region 103990	896 bp upstream
Tssr103991	transcription start site region 103991	969 bp upstream
Tssr103992	transcription start site region 103992	990 bp upstream
Tssr103993	transcription start site region 103993	1466 bp upstream
Tssr103994	transcription start site region 103994	1538 bp upstream
Tssr103995	transcription start site region 103995	1714 bp upstream
Tssr103996	transcription start site region 103996	1766 bp upstream
Tssr103997	transcription start site region 103997	1936 bp upstream