rs581253293 SNP Detail

Summary

• ID
  rs581253293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:14930938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AAAGAAAGAA AGAAAGAAAG
  R
  AAGGAAGGAA GGAAGGAAGG AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SM/J	ST/bJ
ss919148584	MGP_WTSI_8_14880938	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	A	G	G	A	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SM/J	ST/bJ
rs581253293					SNP	A	G	G	G	G	A	G	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919148584	MGP_WTSI_8_14880938	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:14930938 () rs orientation: forward

Symbol	Name	Function Class
Cln8	CLN8 transmembrane ER and ERGIC protein	397 bp upstream
Gm64195	predicted gene, 64195	1688 bp upstream
Rr660118	regulatory region 660118	1285 bp distal
Rr660119	regulatory region 660119	1665 bp distal
Rr660120	regulatory region 660120	1528 bp distal
Rr660121	regulatory region 660121	306 bp distal
Tssr76455	transcription start site region 76455	630 bp upstream
Tssr76456	transcription start site region 76456	681 bp upstream
Tssr76457	transcription start site region 76457	691 bp upstream