rs581258586 SNP Detail

Summary

• ID
  rs581258586
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAT CAGCAGTGGT GGTGACATCA
  S
  CAGTGGTTGT GATTTCAGCA GTGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss917727680	MGP_WTSI_5_137149355	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	G	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	DBA/2J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs581258586					SNP	G	C	G	G	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727680	MGP_WTSI_5_137149355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178203 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	87 bp upstream
Tssr1678	transcription start site region 1678	1129 bp downstream
Tssr49309	transcription start site region 49309	423 bp upstream
Tssr49310	transcription start site region 49310	783 bp upstream
Tssr49311	transcription start site region 49311	797 bp upstream
Tssr49312	transcription start site region 49312	1177 bp upstream
Tssr49313	transcription start site region 49313	1425 bp upstream
Tssr49314	transcription start site region 49314	1696 bp upstream
Tssr49315	transcription start site region 49315	1712 bp upstream
Tssr53919	transcription start site region 53919	283 bp downstream
Tssr53920	transcription start site region 53920	299 bp downstream
Tssr53921	transcription start site region 53921	454 bp downstream
Tssr53922	transcription start site region 53922	495 bp downstream
Tssr53923	transcription start site region 53923	536 bp downstream
Tssr53924	transcription start site region 53924	550 bp downstream
Tssr53925	transcription start site region 53925	588 bp downstream
Tssr53926	transcription start site region 53926	619 bp downstream
Tssr53927	transcription start site region 53927	768 bp downstream
Tssr53928	transcription start site region 53928	786 bp downstream
Tssr53929	transcription start site region 53929	823 bp downstream
Tssr53930	transcription start site region 53930	888 bp downstream
Tssr53931	transcription start site region 53931	913 bp downstream
Tssr53932	transcription start site region 53932	929 bp downstream
Tssr53933	transcription start site region 53933	967 bp downstream
Tssr53934	transcription start site region 53934	999 bp downstream
Tssr53935	transcription start site region 53935	1050 bp downstream
Tssr53936	transcription start site region 53936	1071 bp downstream
Tssr53937	transcription start site region 53937	1161 bp downstream
Tssr53938	transcription start site region 53938	1197 bp downstream
Tssr53939	transcription start site region 53939	1251 bp downstream
Tssr53940	transcription start site region 53940	1427 bp downstream
Tssr53941	transcription start site region 53941	1467 bp downstream
Tssr53942	transcription start site region 53942	1526 bp downstream
Tssr53943	transcription start site region 53943	1691 bp downstream
Tssr53944	transcription start site region 53944	1740 bp downstream
Tssr53945	transcription start site region 53945	1750 bp downstream
Tssr53946	transcription start site region 53946	1771 bp downstream
Tssr53947	transcription start site region 53947	1879 bp downstream