rs581272621 SNP Detail

Summary

• ID
  rs581272621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40713618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGA GATTACGTCC ATCTAGATGG
  K
  TGCTGCAGGT TTTTGTTTTC TGTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
ss919793881	MGP_WTSI_9_40802322	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
rs581272621					SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919793881	MGP_WTSI_9_40802322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40713618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21603	CpG island 21603	431 bp distal
Gm57042	predicted gene, 57042	1494 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	773 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	1261 bp upstream
Snord14d	small nucleolar RNA, C/D box 14D	1673 bp upstream
Tssr84481	transcription start site region 84481	1038 bp downstream
Tssr84482	transcription start site region 84482	409 bp downstream
Tssr84483	transcription start site region 84483	44 bp upstream
Tssr84484	transcription start site region 84484	303 bp upstream
Tssr84485	transcription start site region 84485	1902 bp upstream
Tssr88972	transcription start site region 88972	1536 bp upstream