rs581326245 SNP Detail

Summary

• ID
  rs581326245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85601651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GGAGGAGGAG GAGGAGGAGG
  R
  GTGACTGGGA GAAACAAGAC TACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss923335324	MGP_WTSI_16_85804763	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs581326245					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923335324	MGP_WTSI_16_85804763	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85601651 () rs orientation: forward

Symbol	Name	Function Class
Adamts1	ADAM metallopeptidase with thrombospondin type 1 motif 1	1650 bp upstream
Cpgi8390	CpG island 8390	1289 bp distal
D16Mit152	DNA segment, Chr 16, Massachusetts Institute of Technology 152	825 bp distal
Rr518656	regulatory region 518656	1160 bp distal
Rr518657	regulatory region 518657	within coordinates
Rr518658	regulatory region 518658	714 bp proximal
Tssr141911	transcription start site region 141911	1642 bp upstream
Tssr141912	transcription start site region 141912	802 bp upstream