rs581336051 SNP Detail

Summary

• ID
  rs581336051
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA TCCTCTTTCT CCTTACGGAA
  C
  AAGGAAAGGG ATCTGAGTTG AAGAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss925387960	MGP_WTSI_10_51494718_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581336051					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925387960	MGP_WTSI_10_51494718_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370814 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40645	predicted gene, 40645			within coordinates
Gm49339	predicted gene, 49339			Intron
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A			Intron
				Noncoding-Transcript-Variant
Tssr93270	transcription start site region 93270			1977 bp downstream
Tssr93271	transcription start site region 93271			1859 bp downstream
Tssr93272	transcription start site region 93272			1804 bp downstream
Tssr93273	transcription start site region 93273			1533 bp downstream
Tssr93274	transcription start site region 93274			1000 bp downstream
Tssr93275	transcription start site region 93275			867 bp downstream
Tssr93276	transcription start site region 93276			813 bp downstream
Tssr93277	transcription start site region 93277			765 bp downstream
Tssr93278	transcription start site region 93278			729 bp downstream
Tssr93279	transcription start site region 93279			573 bp downstream
Tssr93280	transcription start site region 93280			126 bp downstream
Tssr93281	transcription start site region 93281			78 bp downstream
Tssr93282	transcription start site region 93282			60 bp downstream
Tssr93283	transcription start site region 93283			4 bp upstream
Tssr93284	transcription start site region 93284			338 bp upstream
Tssr93285	transcription start site region 93285			563 bp upstream
Tssr93286	transcription start site region 93286			677 bp upstream
Tssr93287	transcription start site region 93287			1039 bp upstream
Tssr93288	transcription start site region 93288			1299 bp upstream
Tssr93289	transcription start site region 93289			1367 bp upstream
Tssr97556	transcription start site region 97556			207 bp upstream
Tssr97557	transcription start site region 97557			116 bp downstream
Tssr97558	transcription start site region 97558			1303 bp downstream
Tssr97559	transcription start site region 97559			1773 bp downstream
Tssr97560	transcription start site region 97560			1869 bp downstream