rs581337325 SNP Detail

Summary

• ID
  rs581337325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87841805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATA GATAGATAGA TAGATAGATA
  R
  ATAGTTTCCC TTTTAGTCTA ACACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917545957	MGP_WTSI_5_87693946	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581337325					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917545957	MGP_WTSI_5_87693946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87841805 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	within coordinates
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	within coordinates
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	22 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	83 bp distal
Tssr1529	transcription start site region 1529	608 bp upstream
Tssr46883	transcription start site region 46883	555 bp upstream
Tssr46884	transcription start site region 46884	568 bp upstream
Tssr46885	transcription start site region 46885	596 bp upstream
Tssr46886	transcription start site region 46886	624 bp upstream
Tssr46887	transcription start site region 46887	641 bp upstream
Tssr46888	transcription start site region 46888	710 bp upstream
Tssr46889	transcription start site region 46889	759 bp upstream
Tssr46890	transcription start site region 46890	774 bp upstream
Tssr46891	transcription start site region 46891	818 bp upstream
Tssr46892	transcription start site region 46892	822 bp upstream
Tssr46893	transcription start site region 46893	850 bp upstream
Tssr46894	transcription start site region 46894	897 bp upstream
Tssr46895	transcription start site region 46895	920 bp upstream
Tssr46896	transcription start site region 46896	1015 bp upstream
Tssr51613	transcription start site region 51613	1267 bp upstream
Tssr51614	transcription start site region 51614	1204 bp upstream
Tssr51615	transcription start site region 51615	1148 bp upstream
Tssr51616	transcription start site region 51616	1114 bp upstream
Tssr51617	transcription start site region 51617	1105 bp upstream
Tssr51618	transcription start site region 51618	584 bp downstream
Tssr51619	transcription start site region 51619	622 bp downstream
Tssr51620	transcription start site region 51620	631 bp downstream
Tssr51621	transcription start site region 51621	640 bp downstream
Tssr51622	transcription start site region 51622	678 bp downstream
Tssr51623	transcription start site region 51623	703 bp downstream
Tssr51624	transcription start site region 51624	721 bp downstream
Tssr51625	transcription start site region 51625	727 bp downstream
Tssr51626	transcription start site region 51626	737 bp downstream
Tssr51627	transcription start site region 51627	752 bp downstream
Tssr51628	transcription start site region 51628	793 bp downstream
Tssr51629	transcription start site region 51629	885 bp downstream
Tssr51630	transcription start site region 51630	979 bp downstream
Tssr51631	transcription start site region 51631	1028 bp downstream
Tssr51632	transcription start site region 51632	1322 bp downstream