rs581397588 SNP Detail

Summary

• ID
  rs581397588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108885392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC ACAACTACTA CCGTGGTTCA
  Y
  GCCCCTTACC CTCAGCCTCA ACCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920017653	MGP_WTSI_9_109056324	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs581397588					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920017653	MGP_WTSI_9_109056324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108885392 () rs orientation: forward

Symbol	Name	Function Class
Gm53191	predicted gene, 53191	1609 bp downstream
Rr368866	regulatory region 368866	1245 bp downstream
Rr686954	regulatory region 686954	1451 bp distal
Rr686955	regulatory region 686955	702 bp distal
Rr686956	regulatory region 686956	1262 bp proximal
Shisa5	shisa family member 5	within coordinates
Trex1	three prime repair exonuclease 1	1608 bp downstream
Tssr87207	transcription start site region 87207	1453 bp downstream
Tssr87208	transcription start site region 87208	1423 bp downstream
Tssr87209	transcription start site region 87209	1334 bp downstream
Tssr87210	transcription start site region 87210	1284 bp downstream
Tssr87211	transcription start site region 87211	1210 bp downstream
Tssr87212	transcription start site region 87212	691 bp downstream
Tssr87213	transcription start site region 87213	333 bp downstream
Tssr87214	transcription start site region 87214	261 bp downstream
Tssr87215	transcription start site region 87215	30 bp downstream
Tssr87216	transcription start site region 87216	within coordinates
Tssr87217	transcription start site region 87217	59 bp upstream
Tssr87218	transcription start site region 87218	313 bp upstream
Tssr87219	transcription start site region 87219	614 bp upstream
Tssr87220	transcription start site region 87220	700 bp upstream
Tssr87221	transcription start site region 87221	924 bp upstream
Tssr87222	transcription start site region 87222	971 bp upstream
Tssr91570	transcription start site region 91570	1528 bp upstream
Tssr91571	transcription start site region 91571	1391 bp downstream
Tssr91572	transcription start site region 91572	1912 bp downstream