rs581425490 SNP Detail

Summary

• ID
  rs581425490
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3037613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT CAATGATTTT CATTTTTCTT
  A
  CCTTATTCCA CGTCCTATAG TGGAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	SM/J	SPRET/EiJ	SWR/J
ss919606980	MGP_WTSI_9_3037613	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	SM/J	SPRET/EiJ	SWR/J
rs581425490					SNP	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919606980	MGP_WTSI_9_3037613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3037613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	1024 bp distal
Cpgi21329	CpG island 21329	395 bp proximal
Mir101c	microRNA 101c	1056 bp downstream
Tssr83598	transcription start site region 83598	1876 bp downstream
Tssr83599	transcription start site region 83599	1710 bp downstream
Tssr83600	transcription start site region 83600	1515 bp downstream
Tssr83601	transcription start site region 83601	1270 bp downstream
Tssr83602	transcription start site region 83602	1226 bp downstream
Tssr83603	transcription start site region 83603	1212 bp downstream
Tssr83604	transcription start site region 83604	258 bp downstream
Tssr83605	transcription start site region 83605	400 bp upstream
Tssr83606	transcription start site region 83606	569 bp upstream
Tssr88025	transcription start site region 88025	1691 bp upstream
Tssr88026	transcription start site region 88026	1485 bp upstream
Tssr88027	transcription start site region 88027	1240 bp upstream
Tssr88028	transcription start site region 88028	1216 bp upstream
Tssr88029	transcription start site region 88029	431 bp downstream
Tssr88030	transcription start site region 88030	570 bp downstream