rs581429589 SNP Detail

Summary

• ID
  rs581429589
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8556282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TCTTCCTACC CGCGCGTCGT
  C
  GGCGGCGGCG GCCCCGGGGC GGCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss923025100	MGP_WTSI_16_8738418	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs581429589					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923025100	MGP_WTSI_16_8738418	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8556282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7942	CpG island 7942	within coordinates
Gm59849	predicted gene, 59849	within coordinates
Rr511319	regulatory region 511319	1853 bp distal
Rr511320	regulatory region 511320	920 bp distal
Rr511321	regulatory region 511321	87 bp distal
Rr511322	regulatory region 511322	797 bp distal
Rr511323	regulatory region 511323	within coordinates
Tssr139876	transcription start site region 139876	677 bp upstream
Tssr139877	transcription start site region 139877	466 bp downstream
Tssr139878	transcription start site region 139878	481 bp downstream
Tssr139879	transcription start site region 139879	543 bp downstream
Usp7	ubiquitin specific peptidase 7	within coordinates